Global transcriptomic responses of roseithermus sacchariphilus strain RA in media supplemented with beechwood xylan

• Main Authors: Liew, Kok Jun, Bruce, Neil C., Sani, Rajesh Kumar, Chong, Chun Shiong, Yaakop, Amira Suriaty, Shamsir, Mohd. Shahir, Goh, Kian Mau
• Format: Article
• Language: English
• Published: MDPI AG 2020
• Subjects: Q Science (General)
• Online Access: http://eprints.utm.my/id/eprint/90688/1/LiewKokJun2020_GlobalTranscriptomicResponsesofRoseithermusSacchariphilus.pdf; http://eprints.utm.my/id/eprint/90688/; http://dx.doi.org/10.3390/microorganisms8070976

The majority of the members in order Rhodothermales are underexplored prokaryotic extremophiles. Roseithermus, a new genus within Rhodothermales, was first described in 2019. Roseithermus sacchariphilus is the only species in this genus. The current report aims to evaluate the transcriptomic responses of R. sacchariphilus strain RA when cultivated on beechwood xylan. Strain RA doubled its growth in Marine Broth (MB) containing xylan compared to Marine Broth (MB) alone. Strain RA harbors 54 potential glycosyl hydrolases (GHs) that are affiliated with 30 families, including cellulases (families GH 3, 5, 9, and 44) and hemicellulases (GH 2, 10, 16, 29, 31,43, 51, 53, 67, 78, 92, 106, 113, 130, and 154). The majority of these GHs were upregulated when the cells were grown in MB containing xylan medium and enzymatic activities for xylanase, endoglucanase, β-xylosidase, and β-glucosidase were elevated. Interestingly, with the introduction of xylan, five out of six cellulolytic genes were upregulated. Furthermore, approximately 1122 genes equivalent to one-third of the total genes for strain RA were upregulated. These upregulated genes were mostly involved in transportation, chemotaxis, and membrane components synthesis.