A review of random walk-based method for the identification of disease genes and disease modules.
Traditional techniques for identifying disease genes and disease modules involve high-cost clinical experiments and unpredictable time consumption for analysis. Network-based computational approaches usually focus on the systematic study of molecular networks to predict the associations between dise...
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Institute of Electrical and Electronics Engineers Inc.
2023
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Online Access: | http://eprints.utm.my/104908/1/RohayantiHassan2023_AReviewofRandomWalkBasedMethod.pdf http://eprints.utm.my/104908/ http://dx.doi.org/10.1109/ACCESS.2023.3324985 |
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my.utm.1049082024-03-25T09:33:50Z http://eprints.utm.my/104908/ A review of random walk-based method for the identification of disease genes and disease modules. Hui, Tay Xin Kasim, Shahreen Md. Fudzee, Mohd. Farhan Sutikno, Tole Hassan, Rohayanti Abdul Aziz, Izzatdin Hasan, Mohd. Hilmi Jaafar, Jafreezal Alharbi, Metab Sen, Seah Choon T Technology (General) TK7885-7895 Computer engineer. Computer hardware Traditional techniques for identifying disease genes and disease modules involve high-cost clinical experiments and unpredictable time consumption for analysis. Network-based computational approaches usually focus on the systematic study of molecular networks to predict the associations between diseases and genes. The random walk-based method is a network-based approach that utilises biological networks for analysis. As the random walk models efficiently capture the complex interplay among molecules in diseases, it is extensively applied in biological problem-solving based on networks. Despite their comprehensive employment, the fundamentals of random walk and overall background may not be fully understood, leading to misinterpretation of results. This review aims to cover the fundamental knowledge of random walk models for biological network analysis. This study reviewed diffusion-based random walk methods for disease gene prediction and disease module identification. The random walk-based disease gene prediction methods are categorised into node classification and link prediction tasks. This study details the advantages and limitations of each method. Finally, the potential challenges and research directions for future studies on random walk models are highlighted. Institute of Electrical and Electronics Engineers Inc. 2023-10-16 Article PeerReviewed application/pdf en http://eprints.utm.my/104908/1/RohayantiHassan2023_AReviewofRandomWalkBasedMethod.pdf Hui, Tay Xin and Kasim, Shahreen and Md. Fudzee, Mohd. Farhan and Sutikno, Tole and Hassan, Rohayanti and Abdul Aziz, Izzatdin and Hasan, Mohd. Hilmi and Jaafar, Jafreezal and Alharbi, Metab and Sen, Seah Choon (2023) A review of random walk-based method for the identification of disease genes and disease modules. IEEE Access, 11 . pp. 116366-116383. ISSN 2169-3536 http://dx.doi.org/10.1109/ACCESS.2023.3324985 DOI: 10.1109/ACCESS.2023.3324985 |
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T Technology (General) TK7885-7895 Computer engineer. Computer hardware Hui, Tay Xin Kasim, Shahreen Md. Fudzee, Mohd. Farhan Sutikno, Tole Hassan, Rohayanti Abdul Aziz, Izzatdin Hasan, Mohd. Hilmi Jaafar, Jafreezal Alharbi, Metab Sen, Seah Choon A review of random walk-based method for the identification of disease genes and disease modules. |
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Traditional techniques for identifying disease genes and disease modules involve high-cost clinical experiments and unpredictable time consumption for analysis. Network-based computational approaches usually focus on the systematic study of molecular networks to predict the associations between diseases and genes. The random walk-based method is a network-based approach that utilises biological networks for analysis. As the random walk models efficiently capture the complex interplay among molecules in diseases, it is extensively applied in biological problem-solving based on networks. Despite their comprehensive employment, the fundamentals of random walk and overall background may not be fully understood, leading to misinterpretation of results. This review aims to cover the fundamental knowledge of random walk models for biological network analysis. This study reviewed diffusion-based random walk methods for disease gene prediction and disease module identification. The random walk-based disease gene prediction methods are categorised into node classification and link prediction tasks. This study details the advantages and limitations of each method. Finally, the potential challenges and research directions for future studies on random walk models are highlighted. |
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Article |
author |
Hui, Tay Xin Kasim, Shahreen Md. Fudzee, Mohd. Farhan Sutikno, Tole Hassan, Rohayanti Abdul Aziz, Izzatdin Hasan, Mohd. Hilmi Jaafar, Jafreezal Alharbi, Metab Sen, Seah Choon |
author_facet |
Hui, Tay Xin Kasim, Shahreen Md. Fudzee, Mohd. Farhan Sutikno, Tole Hassan, Rohayanti Abdul Aziz, Izzatdin Hasan, Mohd. Hilmi Jaafar, Jafreezal Alharbi, Metab Sen, Seah Choon |
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Hui, Tay Xin |
title |
A review of random walk-based method for the identification of disease genes and disease modules. |
title_short |
A review of random walk-based method for the identification of disease genes and disease modules. |
title_full |
A review of random walk-based method for the identification of disease genes and disease modules. |
title_fullStr |
A review of random walk-based method for the identification of disease genes and disease modules. |
title_full_unstemmed |
A review of random walk-based method for the identification of disease genes and disease modules. |
title_sort |
review of random walk-based method for the identification of disease genes and disease modules. |
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Institute of Electrical and Electronics Engineers Inc. |
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2023 |
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http://eprints.utm.my/104908/1/RohayantiHassan2023_AReviewofRandomWalkBasedMethod.pdf http://eprints.utm.my/104908/ http://dx.doi.org/10.1109/ACCESS.2023.3324985 |
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