Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution.

• Main Authors: Abdul Rashid, Nur'Aini, Abdullah, Rosni, Hj. Talib, Abdullah Zawawi
• Format: Conference or Workshop Item
• Language: English
• Published: 2007
• Subjects: QA75.5-76.95 Electronic computers. Computer science
• Online Access: http://eprints.usm.my/9497/1/Parallel_Homologous_Search_with_Hirschberg_Algorithm_A_Hybird_MPI-Pthreads_Solution.pdf; http://eprints.usm.my/9497/

In this paper, we apply two different parallel programming model, the message passing model using Message Passing Interface (MPI) and the multithreaded model using Pthreads, to-protein sequence homologous search. The protein sequence homologous search uses Hirschberg algorithm for the pair-wise seq...