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The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka

Gyrinops walla is an important agarwood-producing tree and threatened species from Sri Lanka. Herein, we assembled and characterized the complete chloroplast (cp) genome of G. walla as a genomic resource for conservation purposes. The 175,130 bp long genome is comprised of 87,376 bp large single-cop...

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Main Authors: Chen, Jingrui, Lee, Shiou Yih, Munugoda, K. D., Mohamed, Rozi, Subasinghe, S. M. C. U. P., Liao, Wenbo
Format: Article
Published: Taylor & Francis 2021
Online Access:http://psasir.upm.edu.my/id/eprint/95354/
https://www.tandfonline.com/doi/full/10.1080/23802359.2021.1926362
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spelling my.upm.eprints.953542023-01-31T08:50:27Z http://psasir.upm.edu.my/id/eprint/95354/ The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka Chen, Jingrui Lee, Shiou Yih Munugoda, K. D. Mohamed, Rozi Subasinghe, S. M. C. U. P. Liao, Wenbo Gyrinops walla is an important agarwood-producing tree and threatened species from Sri Lanka. Herein, we assembled and characterized the complete chloroplast (cp) genome of G. walla as a genomic resource for conservation purposes. The 175,130 bp long genome is comprised of 87,376 bp large single-copy (LSC) and 3316 bp small single-copy (SSC) regions, which are separated by two inverted repeat (IR) region, each with a size of 42,291 bp. A total of 140 genes were predicted for the cp genome, which includes 94 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic analysis showed that G. walla is fully resolved in a sister position to Aquilaria in the family Thymelaeaceae. The data provided will be useful for study on the molecular phylogenetics and evolution of Thymelaeaceae in the future. Taylor & Francis 2021-05-19 Article PeerReviewed Chen, Jingrui and Lee, Shiou Yih and Munugoda, K. D. and Mohamed, Rozi and Subasinghe, S. M. C. U. P. and Liao, Wenbo (2021) The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka. Mitochondrial DNA Part B-Resources, 6 (6). 1699 - 1701. ISSN 2380-2359 https://www.tandfonline.com/doi/full/10.1080/23802359.2021.1926362 10.1080/23802359.2021.1926362
institution Universiti Putra Malaysia
building UPM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Putra Malaysia
content_source UPM Institutional Repository
url_provider http://psasir.upm.edu.my/
description Gyrinops walla is an important agarwood-producing tree and threatened species from Sri Lanka. Herein, we assembled and characterized the complete chloroplast (cp) genome of G. walla as a genomic resource for conservation purposes. The 175,130 bp long genome is comprised of 87,376 bp large single-copy (LSC) and 3316 bp small single-copy (SSC) regions, which are separated by two inverted repeat (IR) region, each with a size of 42,291 bp. A total of 140 genes were predicted for the cp genome, which includes 94 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic analysis showed that G. walla is fully resolved in a sister position to Aquilaria in the family Thymelaeaceae. The data provided will be useful for study on the molecular phylogenetics and evolution of Thymelaeaceae in the future.
format Article
author Chen, Jingrui
Lee, Shiou Yih
Munugoda, K. D.
Mohamed, Rozi
Subasinghe, S. M. C. U. P.
Liao, Wenbo
spellingShingle Chen, Jingrui
Lee, Shiou Yih
Munugoda, K. D.
Mohamed, Rozi
Subasinghe, S. M. C. U. P.
Liao, Wenbo
The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka
author_facet Chen, Jingrui
Lee, Shiou Yih
Munugoda, K. D.
Mohamed, Rozi
Subasinghe, S. M. C. U. P.
Liao, Wenbo
author_sort Chen, Jingrui
title The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka
title_short The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka
title_full The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka
title_fullStr The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka
title_full_unstemmed The complete chloroplast genome of Walla Patta, Gyrinops walla Thymelaeaceae, an agarwood-producing tree species from Sri Lanka
title_sort complete chloroplast genome of walla patta, gyrinops walla thymelaeaceae, an agarwood-producing tree species from sri lanka
publisher Taylor & Francis
publishDate 2021
url http://psasir.upm.edu.my/id/eprint/95354/
https://www.tandfonline.com/doi/full/10.1080/23802359.2021.1926362
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score 13.211869

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