Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions

Shorea acuminata Dyer, Shorea curtisii Dyer ex King, Shorea leprosula Miq., and Shorea parvifolia Dyer are dominant tree species in the tropical rainforest of Peninsular Malaysia, which experienced several climatic changes during Pleistocene. To investigate the current population structure and demog...

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Main Authors: Ishiyama, Hiroko, Inomata, Nobuyuki, Yamazaki, Tsuneyuki, Ab Shukor, Nor Aini, Szmidt, Alfred E.
Format: Article
Language:English
English
Published: 2008
Online Access:http://psasir.upm.edu.my/id/eprint/7491/1/Demographic%20history%20and%20interspecific%20hybridization%20of%20four%20Shorea%20species.pdf
http://psasir.upm.edu.my/id/eprint/7491/
http://dx.doi.org/10.1139/X07-218
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spelling my.upm.eprints.74912015-09-30T08:53:51Z http://psasir.upm.edu.my/id/eprint/7491/ Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions Ishiyama, Hiroko Inomata, Nobuyuki Yamazaki, Tsuneyuki Ab Shukor, Nor Aini Szmidt, Alfred E. Shorea acuminata Dyer, Shorea curtisii Dyer ex King, Shorea leprosula Miq., and Shorea parvifolia Dyer are dominant tree species in the tropical rainforest of Peninsular Malaysia, which experienced several climatic changes during Pleistocene. To investigate the current population structure and demographic history of these species, we analyzed levels and patterns of nucleotide polymorphism of the nuclear gene region PgiC. We also used sequence data of the GapC gene region obtained in our previous study. Negative Tajima's D values observed in both investigated gene regions for S. curtisii, S. leprosula, and S. parvifolia implied that all three species have experienced population expansion events. Little to moderate levels of population differentiation in S. acuminata and S. curtisii suggested recent divergence of the investigated populations after postglacial colonization of the Peninsular Malaysia. In addition, some haplotypes were similar or identical to haplotypes of the other species. The existence of such haplotypes could be partially explained by interspecific hybridization. Indeed, we found some putative hybrid individuals. Interspecific hybridization among closely related species might have contributed to the polymorphism of the investigated species. 2008 Article PeerReviewed application/pdf en http://psasir.upm.edu.my/id/eprint/7491/1/Demographic%20history%20and%20interspecific%20hybridization%20of%20four%20Shorea%20species.pdf Ishiyama, Hiroko and Inomata, Nobuyuki and Yamazaki, Tsuneyuki and Ab Shukor, Nor Aini and Szmidt, Alfred E. (2008) Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions. Canadian Journal of Forest Research, 38 (5). pp. 996-1007. ISSN 1208-6037 http://dx.doi.org/10.1139/X07-218 English
institution Universiti Putra Malaysia
building UPM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Putra Malaysia
content_source UPM Institutional Repository
url_provider http://psasir.upm.edu.my/
language English
English
description Shorea acuminata Dyer, Shorea curtisii Dyer ex King, Shorea leprosula Miq., and Shorea parvifolia Dyer are dominant tree species in the tropical rainforest of Peninsular Malaysia, which experienced several climatic changes during Pleistocene. To investigate the current population structure and demographic history of these species, we analyzed levels and patterns of nucleotide polymorphism of the nuclear gene region PgiC. We also used sequence data of the GapC gene region obtained in our previous study. Negative Tajima's D values observed in both investigated gene regions for S. curtisii, S. leprosula, and S. parvifolia implied that all three species have experienced population expansion events. Little to moderate levels of population differentiation in S. acuminata and S. curtisii suggested recent divergence of the investigated populations after postglacial colonization of the Peninsular Malaysia. In addition, some haplotypes were similar or identical to haplotypes of the other species. The existence of such haplotypes could be partially explained by interspecific hybridization. Indeed, we found some putative hybrid individuals. Interspecific hybridization among closely related species might have contributed to the polymorphism of the investigated species.
format Article
author Ishiyama, Hiroko
Inomata, Nobuyuki
Yamazaki, Tsuneyuki
Ab Shukor, Nor Aini
Szmidt, Alfred E.
spellingShingle Ishiyama, Hiroko
Inomata, Nobuyuki
Yamazaki, Tsuneyuki
Ab Shukor, Nor Aini
Szmidt, Alfred E.
Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions
author_facet Ishiyama, Hiroko
Inomata, Nobuyuki
Yamazaki, Tsuneyuki
Ab Shukor, Nor Aini
Szmidt, Alfred E.
author_sort Ishiyama, Hiroko
title Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions
title_short Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions
title_full Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions
title_fullStr Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions
title_full_unstemmed Demographic history and interspecific hybridization of four Shorea species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions
title_sort demographic history and interspecific hybridization of four shorea species (dipterocarpaceae) from peninsular malaysia inferred from nucleotide polymorphism in nuclear gene regions
publishDate 2008
url http://psasir.upm.edu.my/id/eprint/7491/1/Demographic%20history%20and%20interspecific%20hybridization%20of%20four%20Shorea%20species.pdf
http://psasir.upm.edu.my/id/eprint/7491/
http://dx.doi.org/10.1139/X07-218
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