DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)

Tuberculosis (TB) remains a significant global health challenge, characterized by high incidence and mortality rates on a global scale. With the rapid advancement of computer-aided diagnosis (CAD) tools in recent years, CAD has assumed an increasingly crucial role in supporting TB diagnosis. Nonethe...

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Main Authors: Tan, Zhuoyi, Madzin, Hizmawati, Norafida, Bahari, ChongShuang, Yang, Sun, Wei, Nie, Tianyu, Cai, Fengzhou
Format: Article
Language:English
Published: Elsevier BV 2024
Online Access:http://psasir.upm.edu.my/id/eprint/106115/1/1-s2.0-S2405844024015214-main.pdf
http://psasir.upm.edu.my/id/eprint/106115/
https://www.sciencedirect.com/science/article/pii/S2405844024015214
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spelling my.upm.eprints.1061152024-10-03T04:57:33Z http://psasir.upm.edu.my/id/eprint/106115/ DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT) Tan, Zhuoyi Madzin, Hizmawati Norafida, Bahari ChongShuang, Yang Sun, Wei Nie, Tianyu Cai, Fengzhou Tuberculosis (TB) remains a significant global health challenge, characterized by high incidence and mortality rates on a global scale. With the rapid advancement of computer-aided diagnosis (CAD) tools in recent years, CAD has assumed an increasingly crucial role in supporting TB diagnosis. Nonetheless, the development of CAD for TB diagnosis heavily relies on well-annotated computerized tomography (CT) datasets. Currently, the available annotations in TB CT datasets are still limited, which in turn restricts the development of CAD tools for TB diagnosis to some extent. To address this limitation, we introduce DeepPulmoTB, a CT multi-task learning dataset explicitly designed for TB diagnosis. To demonstrate the advantages of DeepPulmoTB, we propose a novel multi-task learning model, DeepPulmoTBNet (DPTBNet), for the joint segmentation and classification of lesion tissues in CT images. The architecture of DPTBNet comprises two subnets: SwinUnetR for the segmentation task, and a lightweight multi-scale network for the classification task. Furthermore, to enhance the model's capacity to capture TB lesion features, we introduce an improved iterative optimization algorithm that refines feature maps by integrating probability maps obtained in previous iterations. Extensive experiments validate the effectiveness of DPTBNet and the practicality of the DeepPulmoTB dataset. Elsevier BV 2024 Article PeerReviewed text en http://psasir.upm.edu.my/id/eprint/106115/1/1-s2.0-S2405844024015214-main.pdf Tan, Zhuoyi and Madzin, Hizmawati and Norafida, Bahari and ChongShuang, Yang and Sun, Wei and Nie, Tianyu and Cai, Fengzhou (2024) DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT). Heliyon, 10 (4). art. no. 25490. pp. 1-18. ISSN 2405-8440 https://www.sciencedirect.com/science/article/pii/S2405844024015214 10.1016/j.heliyon.2024.e25490
institution Universiti Putra Malaysia
building UPM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Putra Malaysia
content_source UPM Institutional Repository
url_provider http://psasir.upm.edu.my/
language English
description Tuberculosis (TB) remains a significant global health challenge, characterized by high incidence and mortality rates on a global scale. With the rapid advancement of computer-aided diagnosis (CAD) tools in recent years, CAD has assumed an increasingly crucial role in supporting TB diagnosis. Nonetheless, the development of CAD for TB diagnosis heavily relies on well-annotated computerized tomography (CT) datasets. Currently, the available annotations in TB CT datasets are still limited, which in turn restricts the development of CAD tools for TB diagnosis to some extent. To address this limitation, we introduce DeepPulmoTB, a CT multi-task learning dataset explicitly designed for TB diagnosis. To demonstrate the advantages of DeepPulmoTB, we propose a novel multi-task learning model, DeepPulmoTBNet (DPTBNet), for the joint segmentation and classification of lesion tissues in CT images. The architecture of DPTBNet comprises two subnets: SwinUnetR for the segmentation task, and a lightweight multi-scale network for the classification task. Furthermore, to enhance the model's capacity to capture TB lesion features, we introduce an improved iterative optimization algorithm that refines feature maps by integrating probability maps obtained in previous iterations. Extensive experiments validate the effectiveness of DPTBNet and the practicality of the DeepPulmoTB dataset.
format Article
author Tan, Zhuoyi
Madzin, Hizmawati
Norafida, Bahari
ChongShuang, Yang
Sun, Wei
Nie, Tianyu
Cai, Fengzhou
spellingShingle Tan, Zhuoyi
Madzin, Hizmawati
Norafida, Bahari
ChongShuang, Yang
Sun, Wei
Nie, Tianyu
Cai, Fengzhou
DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)
author_facet Tan, Zhuoyi
Madzin, Hizmawati
Norafida, Bahari
ChongShuang, Yang
Sun, Wei
Nie, Tianyu
Cai, Fengzhou
author_sort Tan, Zhuoyi
title DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)
title_short DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)
title_full DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)
title_fullStr DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)
title_full_unstemmed DeepPulmoTB: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (CT)
title_sort deeppulmotb: a benchmark dataset for multi-task learning of tuberculosis lesions in lung computerized tomography (ct)
publisher Elsevier BV
publishDate 2024
url http://psasir.upm.edu.my/id/eprint/106115/1/1-s2.0-S2405844024015214-main.pdf
http://psasir.upm.edu.my/id/eprint/106115/
https://www.sciencedirect.com/science/article/pii/S2405844024015214
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