Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia

Marinobacter is a genus belonging to the class Gammaproteobacteria and the family Alteromonadaceae. This genus is a Gram-negative bacterium which can be found in a wide range of marine and saline water environments. Here, we present the genome sequence of Marinobacter sp. strain CA1 that was isolate...

Full description

Saved in:
Bibliographic Details
Main Authors: Muthukrishnan, Sarmila, Mohd-Padil, Hirzahida, Mohamed-Alipiah, Norfarrah, Natrah, Ikhsan
Format: Article
Published: Elsevier 2022
Online Access:http://psasir.upm.edu.my/id/eprint/100872/
https://www.sciencedirect.com/science/article/pii/S2352340922002608
Tags: Add Tag
No Tags, Be the first to tag this record!
id my.upm.eprints.100872
record_format eprints
spelling my.upm.eprints.1008722023-07-26T02:51:19Z http://psasir.upm.edu.my/id/eprint/100872/ Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia Muthukrishnan, Sarmila Mohd-Padil, Hirzahida Mohamed-Alipiah, Norfarrah Natrah, Ikhsan Marinobacter is a genus belonging to the class Gammaproteobacteria and the family Alteromonadaceae. This genus is a Gram-negative bacterium which can be found in a wide range of marine and saline water environments. Here, we present the genome sequence of Marinobacter sp. strain CA1 that was isolated from the indigenous diatom found in the whiteleg shrimp, Penaeus vannamei (Bonne 1931) pond in Malaysia. Genome sequencing was done using Pacbio and Illumina sequencing platforms. De novo hybrid assembly based on Pacbio long reads and high quality Illumina short reads yielded a complete circular chromosome with 4.7 M base pair (bp) in size. This genome was submitted to Genbank, NCBI database and can be accessed under accession number: NZ_CP071785 and the BioProject acession number PRJNA710741. This data could be useful for other studies on microalgae and bacteria interaction, and comparative genomics analysis of other Marinobacter species. Elsevier 2022-06 Article PeerReviewed Muthukrishnan, Sarmila and Mohd-Padil, Hirzahida and Mohamed-Alipiah, Norfarrah and Natrah, Ikhsan (2022) Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia. Elsevier, 42. art. no. 108049. pp. 1-5. ISSN 2352-3409 https://www.sciencedirect.com/science/article/pii/S2352340922002608 10.1016/j.dib.2022.108049
institution Universiti Putra Malaysia
building UPM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Putra Malaysia
content_source UPM Institutional Repository
url_provider http://psasir.upm.edu.my/
description Marinobacter is a genus belonging to the class Gammaproteobacteria and the family Alteromonadaceae. This genus is a Gram-negative bacterium which can be found in a wide range of marine and saline water environments. Here, we present the genome sequence of Marinobacter sp. strain CA1 that was isolated from the indigenous diatom found in the whiteleg shrimp, Penaeus vannamei (Bonne 1931) pond in Malaysia. Genome sequencing was done using Pacbio and Illumina sequencing platforms. De novo hybrid assembly based on Pacbio long reads and high quality Illumina short reads yielded a complete circular chromosome with 4.7 M base pair (bp) in size. This genome was submitted to Genbank, NCBI database and can be accessed under accession number: NZ_CP071785 and the BioProject acession number PRJNA710741. This data could be useful for other studies on microalgae and bacteria interaction, and comparative genomics analysis of other Marinobacter species.
format Article
author Muthukrishnan, Sarmila
Mohd-Padil, Hirzahida
Mohamed-Alipiah, Norfarrah
Natrah, Ikhsan
spellingShingle Muthukrishnan, Sarmila
Mohd-Padil, Hirzahida
Mohamed-Alipiah, Norfarrah
Natrah, Ikhsan
Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
author_facet Muthukrishnan, Sarmila
Mohd-Padil, Hirzahida
Mohamed-Alipiah, Norfarrah
Natrah, Ikhsan
author_sort Muthukrishnan, Sarmila
title Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_short Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_full Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_fullStr Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_full_unstemmed Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_sort data on genome assembly and annotation of marinobacter sp. strain ca1 isolated from indigenous diatom found in whiteleg shrimp pond in malaysia
publisher Elsevier
publishDate 2022
url http://psasir.upm.edu.my/id/eprint/100872/
https://www.sciencedirect.com/science/article/pii/S2352340922002608
_version_ 1773545502202134528
score 13.18916