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Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems

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Main Authors: Gunawan, Teddy Surya, Ambikairajah, Eliathamby
Other Authors: tsgunawan@iium.edu.my
Format: Working Paper
Language:English
Published: Institute of Electrical and Electronics Engineers (IEEE) 2012
Subjects:
Genomic signal processing
Gene prediction
Single Program Multiple Data (SPMD)
Multicore system
Amdahl's law
Online Access:http://dspace.unimap.edu.my/xmlui/handle/123456789/21294
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spelling my.unimap-212942012-10-10T09:11:29Z Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems Gunawan, Teddy Surya Ambikairajah, Eliathamby tsgunawan@iium.edu.my e.ambikairajah@unsw.edu.au Genomic signal processing Gene prediction Single Program Multiple Data (SPMD) Multicore system Amdahl's law Link to publisher's homepage at http://ieeexplore.ieee.org/ High processing time is required to classify genomic sequences and to identify protein coding of a DNA sequence. While computer performance has been driven largely by decreasing the size of chips while increasing the number of transistors they contain, the current computing trend is multicore system in which two or more independent cores are integrated into a single package. This paper presents the parallel implementation of the gene and exon identification of DNA sequences using the previously developed modified Gabor wavelet transform on multicore systems. Single Program Multiple Data (SPMD) parallel paradigm will be used in the parallel implementation. Furthermore, the efficiency of the proposed algorithm will be analyzed using Amdahl’s law. 2012-10-10T09:11:29Z 2012-10-10T09:11:29Z 2012-02-27 Working Paper p. 165-168 978-145771989-9 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6178998 http://hdl.handle.net/123456789/21294 en Proceedings of the International Conference on Biomedical Engineering (ICoBE 2012) Institute of Electrical and Electronics Engineers (IEEE)
institution Universiti Malaysia Perlis
building UniMAP Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Malaysia Perlis
content_source UniMAP Library Digital Repository
url_provider http://dspace.unimap.edu.my/
language English
topic Genomic signal processing
Gene prediction
Single Program Multiple Data (SPMD)
Multicore system
Amdahl's law
spellingShingle Genomic signal processing
Gene prediction
Single Program Multiple Data (SPMD)
Multicore system
Amdahl's law
Gunawan, Teddy Surya
Ambikairajah, Eliathamby
Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems
description Link to publisher's homepage at http://ieeexplore.ieee.org/
author2 tsgunawan@iium.edu.my
author_facet tsgunawan@iium.edu.my
Gunawan, Teddy Surya
Ambikairajah, Eliathamby
format Working Paper
author Gunawan, Teddy Surya
Ambikairajah, Eliathamby
author_sort Gunawan, Teddy Surya
title Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems
title_short Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems
title_full Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems
title_fullStr Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems
title_full_unstemmed Parallel implementation of genomic sequences classification using modified Gabor wavelet transform on multicore systems
title_sort parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
publisher Institute of Electrical and Electronics Engineers (IEEE)
publishDate 2012
url http://dspace.unimap.edu.my/xmlui/handle/123456789/21294
_version_ 1643793337919995904
score 13.214268

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