Improvements to the rapid detection of the marine pathogenic bacterium, vibrio harveyi, using loop-mediated isothermal amplification (LAMP) in combination with SYBR green

• Main Authors: Ahmad Mukhlis Abdul Rahman, Julian Ransangan, Vijay Kumar Subbiah
• Format: Article
• Language: English; English
• Published: MDPI 2022
• Subjects: GC1-1581 Oceanography; QR1-502 Microbiology
• Online Access: https://eprints.ums.edu.my/id/eprint/42272/1/ABSTRACT.pdf; https://eprints.ums.edu.my/id/eprint/42272/2/FULL%20TEXT.pdf; https://eprints.ums.edu.my/id/eprint/42272/; https://doi.org/10.3390/microorganisms10122346

The common methods that are presently used to identify Vibrio harveyi include microscopic examination and biochemical, immunological and PCR-based assays. These methods require technical expertise, and can be time-consuming. A rapid method is required for the high-throughput screening of large number of samples. As such, we have developed a rapid, simple yet sensitive and specific detection method based on the use of the loop-mediated isothermal amplification (LAMP) of DNA. A set of six primers, i.e., two outer, two inner and two loop primers, was designed based on the in silico analysis of a large pool of 39 strains of the toxR gene sequence of V. harveyi. The addition of the loop primers decreased the reaction time of the LAMP by more than half. Furthermore, with the application of SYBR Green, the result can be obtained as quickly as in 10 to 15 min without the need of gel electrophoresis. The specificity of the method primers was then determined by performing LAMP with Vibrio and non-Vibrio samples. LAMP has a greater sensitivity than PCR reaction. The sensitivity of PCR was at 0.6 pg concentration of V. harveyi recombinant plasmid DNA standard, while LAMP was able to detect lower amounts even at 0.6 fg. The development of the LAMP assay will provide a valuable tool for the high-throughput rapid detection of V. harveyi contamination both in laboratories and in the field.