Actinomadura graeca sp. nov.: A novel producer of the macrocyclic antibiotic zelkovamycin

• Main Authors: Tarantini, Francesco Saverio, Brunati, Mara, Taravella, Anna, Carrano, Lucia, Parenti, Francesco, Hong, Kar Wai, Williams, Paul, Chan, Kok Gan, Heeb, Stephan, Chan, Weng C.
• Format: Article
• Published: Public Library of Science 2021
• Subjects: Q Science (General)
• Online Access: http://eprints.um.edu.my/34390/

As part of a screening programme for antibiotic-producing bacteria, a novel Actinomadura species was discovered from a soil sample collected in Santorini, Greece. Preliminary 16S rRNA gene sequence comparisons highlighted Actinomadura macra as the most similar characterised species. However, whole-genome sequencing revealed an average nucleotide identity (ANI) value of 89% with A. macra, the highest among related species. Further phenotypic and chemotaxonomic analyses confirmed that the isolate represents a previously uncharacterised species in the genus Actinomadura, for which the name Actinomadura graeca sp. nov. is proposed (type strain 32-07(T)). The G+C content of A. graeca 32-07 is 72.36%. The cell wall contains DL-diaminopimelic acid, intracellular sugars are glucose, ribose and galactose, the predominant menaquinone is MK-9(H-6), the major cellular lipid is phosphatidylinositol and fatty acids consist mainly of hexadecanoic acid. No mycolic acid was detected. Furthermore, A. graeca 32-07 has been confirmed as a novel producer of the non-ribosomal peptide antibiotic zelkovamycin and we report herein a provisional description of the unique biosynthetic gene cluster.