Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)

Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and...

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Main Authors: Yong, Hoi-Sen, Song, Sze-Looi, Chua, Kah-Ooi, Suana, I. Wayan, Eamsobhana, Praphathip, Tan, Ji, Lim, Phaik-Eem, Chan, Kok-Gan
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Published: Nature Research 2021
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Online Access:http://eprints.um.edu.my/33924/
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spelling my.um.eprints.339242022-08-01T02:06:18Z http://eprints.um.edu.my/33924/ Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) Yong, Hoi-Sen Song, Sze-Looi Chua, Kah-Ooi Suana, I. Wayan Eamsobhana, Praphathip Tan, Ji Lim, Phaik-Eem Chan, Kok-Gan Q Science (General) T Technology (General) Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics. Nature Research 2021-05-21 Article PeerReviewed Yong, Hoi-Sen and Song, Sze-Looi and Chua, Kah-Ooi and Suana, I. Wayan and Eamsobhana, Praphathip and Tan, Ji and Lim, Phaik-Eem and Chan, Kok-Gan (2021) Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea). Scientific Reports, 11 (1). ISSN 2045-2322, DOI https://doi.org/10.1038/s41598-021-90162-1 <https://doi.org/10.1038/s41598-021-90162-1>. 10.1038/s41598-021-90162-1
institution Universiti Malaya
building UM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Malaya
content_source UM Research Repository
url_provider http://eprints.um.edu.my/
topic Q Science (General)
T Technology (General)
spellingShingle Q Science (General)
T Technology (General)
Yong, Hoi-Sen
Song, Sze-Looi
Chua, Kah-Ooi
Suana, I. Wayan
Eamsobhana, Praphathip
Tan, Ji
Lim, Phaik-Eem
Chan, Kok-Gan
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
description Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics.
format Article
author Yong, Hoi-Sen
Song, Sze-Looi
Chua, Kah-Ooi
Suana, I. Wayan
Eamsobhana, Praphathip
Tan, Ji
Lim, Phaik-Eem
Chan, Kok-Gan
author_facet Yong, Hoi-Sen
Song, Sze-Looi
Chua, Kah-Ooi
Suana, I. Wayan
Eamsobhana, Praphathip
Tan, Ji
Lim, Phaik-Eem
Chan, Kok-Gan
author_sort Yong, Hoi-Sen
title Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_short Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_full Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_fullStr Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_full_unstemmed Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_sort complete mitochondrial genomes and phylogenetic relationships of the genera nephila and trichonephila (araneae, araneoidea)
publisher Nature Research
publishDate 2021
url http://eprints.um.edu.my/33924/
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