Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae)
Impatiens balsamina (Balsaminaceae) is both an ornamental and medicinal plant featured in many Asian traditional remedies due to an abundance of selected secondary metabolites with beneficial pharmacological properties. Attempts to improve production of biocompounds have led to characterization of...
Saved in:
Main Authors: | , |
---|---|
Format: | Article |
Language: | English |
Published: |
Penerbit Universiti Kebangsaan Malaysia
2019
|
Online Access: | http://journalarticle.ukm.my/19355/1/48_05_08.pdf http://journalarticle.ukm.my/19355/ https://jms.mabjournal.com/index.php/mab/issue/view/8 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
id |
my-ukm.journal.19355 |
---|---|
record_format |
eprints |
spelling |
my-ukm.journal.193552022-08-16T00:47:41Z http://journalarticle.ukm.my/19355/ Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) Foong, Lian Chee Tam, Sheh May Impatiens balsamina (Balsaminaceae) is both an ornamental and medicinal plant featured in many Asian traditional remedies due to an abundance of selected secondary metabolites with beneficial pharmacological properties. Attempts to improve production of biocompounds have led to characterization of genes, gene expression and pathways involved in secondary metabolites biosynthesis in I. balsamina. Gene expression analysis by quantitative reverse transcription PCR (qRT-PCR) technique has been well-established but its reliability is heavily dependent on the selection of suitable reference genes, which information is currently lacking for I. balsamina, and other Impatiens species. In this study, six typical housekeeping genes including actin-like protein (ACT), polyubiquitin-A (UBQ), ubiquitin-conjugated enzyme E2 (UBC), fructose-bisphosphate aldolase (FBA), elongation factor 1-alpha (EF1-α), and clathrin light chain 1 (CLC) were evaluated as candidate reference genes. Expression stability was tested in four tissue types (leaf, flower, early- and mature stage capsules) of I. balsamina. FBA, CLC, and EF1-α were observed to be the most stable reference genes across the tested tissue types. When expression data were normalised by the most stable FBA gene, the target secondary metabolite biosynthesis pathway genes showed significant different expression pattern compared to the least stable UBQ gene. The use of multiple reference genes in the combination of either FBA + EF1-α or FBA + CLC + EF1-α was observed to give more reliable results compared with a single gene. This study provides a resource for selection of suitable reference gene(s) for future gene expression normalisation experiments in I. balsamina. Penerbit Universiti Kebangsaan Malaysia 2019 Article PeerReviewed application/pdf en http://journalarticle.ukm.my/19355/1/48_05_08.pdf Foong, Lian Chee and Tam, Sheh May (2019) Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae). Malaysian Applied Biology, 48 (5). pp. 67-75. ISSN 0126-8643 https://jms.mabjournal.com/index.php/mab/issue/view/8 |
institution |
Universiti Kebangsaan Malaysia |
building |
Tun Sri Lanang Library |
collection |
Institutional Repository |
continent |
Asia |
country |
Malaysia |
content_provider |
Universiti Kebangsaan Malaysia |
content_source |
UKM Journal Article Repository |
url_provider |
http://journalarticle.ukm.my/ |
language |
English |
description |
Impatiens balsamina (Balsaminaceae) is both an ornamental and medicinal plant featured in many Asian traditional remedies
due to an abundance of selected secondary metabolites with beneficial pharmacological properties. Attempts to improve
production of biocompounds have led to characterization of genes, gene expression and pathways involved in secondary
metabolites biosynthesis in I. balsamina. Gene expression analysis by quantitative reverse transcription PCR (qRT-PCR)
technique has been well-established but its reliability is heavily dependent on the selection of suitable reference genes, which
information is currently lacking for I. balsamina, and other Impatiens species. In this study, six typical housekeeping genes
including actin-like protein (ACT), polyubiquitin-A (UBQ), ubiquitin-conjugated enzyme E2 (UBC), fructose-bisphosphate
aldolase (FBA), elongation factor 1-alpha (EF1-α), and clathrin light chain 1 (CLC) were evaluated as candidate reference
genes. Expression stability was tested in four tissue types (leaf, flower, early- and mature stage capsules) of I. balsamina.
FBA, CLC, and EF1-α were observed to be the most stable reference genes across the tested tissue types. When expression
data were normalised by the most stable FBA gene, the target secondary metabolite biosynthesis pathway genes showed
significant different expression pattern compared to the least stable UBQ gene. The use of multiple reference genes in the
combination of either FBA + EF1-α or FBA + CLC + EF1-α was observed to give more reliable results compared with a
single gene. This study provides a resource for selection of suitable reference gene(s) for future gene expression normalisation
experiments in I. balsamina. |
format |
Article |
author |
Foong, Lian Chee Tam, Sheh May |
spellingShingle |
Foong, Lian Chee Tam, Sheh May Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) |
author_facet |
Foong, Lian Chee Tam, Sheh May |
author_sort |
Foong, Lian Chee |
title |
Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) |
title_short |
Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) |
title_full |
Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) |
title_fullStr |
Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) |
title_full_unstemmed |
Selection and validation of reference genes for qRT-PCR expression analyses of leaf, flower and capsules of Impatiens balsamina (Balsaminaceae) |
title_sort |
selection and validation of reference genes for qrt-pcr expression analyses of leaf, flower and capsules of impatiens balsamina (balsaminaceae) |
publisher |
Penerbit Universiti Kebangsaan Malaysia |
publishDate |
2019 |
url |
http://journalarticle.ukm.my/19355/1/48_05_08.pdf http://journalarticle.ukm.my/19355/ https://jms.mabjournal.com/index.php/mab/issue/view/8 |
_version_ |
1743107989332557824 |
score |
13.160551 |