Search Results - (( sequence identification search algorithm ) OR ( java application optimization algorithm ))

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  1. 1

    Linear-pso with binary search algorithm for DNA motif discovery / Hazaruddin Harun by Harun, Hazaruddin

    Published 2015
    “…The Linear-PSO algorithm was the first version of improvement. However due to the longer time required for complete execution of this algorithm, the Binary Search technique was integrated and a new version of the algorithm was developed, namely the Linear-PSO with Binary Search (LPBS) algorithm. …”
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    Thesis
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    DNA motif identification using LPBS by Harun, Hazaruddin, Syed Abdullah, Sharifah Lailee, Hambali, Hamirul ’Aini

    Published 2016
    “…In recent years, several deoxyribonucleic acid (DNA)-based approaches have been developed for species identification including DNA sequencing. The search for motif or patterns in DNA sequences is important in many fields especially in biology. …”
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    Article
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    A modified algorithm for species specific motif discovery by Syed Abdullah, Sharifah Lailee, Harun, Hazaruddin, Taib, Mohd Nasir

    Published 2010
    “…Motif discovery can be used to categorize unknown DNA sequences into their corresponding families. For this study, PSO was modified for discovering motif.The modified Linear-PSO is chosen even though it is a slower because linear search is not a choice but a necessary criteria for identifying motif of pig (Sus Scrofa).Pig motif identification is a critical for halal authentication.The modified Linear-PSO algorithm used linear number for population initializing and next position updating.For each cycle, only a particle called ‘target motif’ was selected and compared with other DNA sequences for fitness calculation. …”
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    Performance evaluation of real-time multiprocessor scheduling algorithms by Alhussian, H., Zakaria, N., Abdulkadir, S.J., Fageeri, S.O.

    Published 2016
    “…These results suggests that optimal algorithms may turn to be non-optimal when practically implemented, unlike USG which reveals far less scheduling overhead and hence could be practically implemented in real-world applications. …”
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    Species motif extraction using LPBS by Syed-Abdullah, Sharifah Lailee, Harun, Hazaruddin

    Published 2013
    “…This paper presents the use of the ̳Linear-PSO with Binary Search‘ (LPBS) algorithm for discovering motifs, especially species specific motifs.In this study, fragments of mitochondrial cytochrome C oxidase subunit I (COI/COX1) and genome of COI were collected from the Genbank online database.For the first experiment, the genome of COI was used as a reference set and other DNA sequences were used as a comparison set.All the collected DNA sequences are from the same species.The results show that the LPBS algorithm is able to discover motifs. …”
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    Route Optimization System by Zulkifli, Abdul Hayy

    Published 2005
    “…After much research into the many algorithms available, and considering some, including Genetic Algorithm (GA), the author selected Dijkstra's Algorithm (DA). …”
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    Final Year Project
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    Angle Based Protein Tertiary Structure Prediction Using Bees Optimization Algorithm by Al-Qattan, Zakaria Noor Aldeen Mahmood

    Published 2010
    “…In this project, angles based control with Bees Optimization search algorithm were adopted to search with guidance the protein conformational space in order to find the optimum solution. …”
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    Simulated Kalman Filter with modified measurement, substitution mutation and hamming distance calculation for solving traveling salesman problem by Suhazri Amrin, Rahmad, Zuwairie, Ibrahim, Zulkifli, Md. Yusof

    Published 2022
    “…There were also attempts to hybridize SKF with other famous algorithms such as Particle Swarm Optimization (PSO), Gravitational Search Algorithm (GSA), and Sine Cosine Algorithm (SCA) to improve its performance. …”
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    Computer Lab Timetabling Using Genetic Algorithm Case Study - Unit ICT by Abdullah, Amran

    Published 2006
    “…Genetic Algorithm is one of the most popular optimization solutions used in various applications such as scheduling. …”
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    Thesis
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    A new search and extraction technique for motion capture data by Mohamad, Rafidei

    Published 2008
    “…In sport science, motion capture data is used for analyzing and perfecting the sequencing mechanics of premiere athletes, as well as monitoring the recovery progress of physical therapies. …”
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    Thesis
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    Examination timetabling using genetic algorithm case study: KUiTTHO by Mohd Salikon, Mohd Zaki

    Published 2005
    “…Genetic Algorithm (GA) is one of the most popular optimization solutions. …”
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    Examination Timetabling Using Genetic Algorithm Case Study : KUiTTHO by Mohd. Zaki, Mohd. Salikon

    Published 2005
    “…Genetic Algorithm (GA) is one of the most popular optimization solutions. …”
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    Thesis